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Some initial results on hardware BLAST acceleration with a reconfigurable architecture

Sotiriadis Evripidis, Kozanitis Christos, Dollas Apostolos

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URIhttp://purl.tuc.gr/dl/dias/5A92440D-9EC6-424D-8C28-7D9A1894513E-
Identifierhttps://doi.org/10.1109/IPDPS.2006.1639532-
Identifierhttp://ieeexplore.ieee.org/document/1639532/-
Languageen-
TitleSome initial results on hardware BLAST acceleration with a reconfigurable architectureen
CreatorSotiriadis Evripidisen
CreatorΣωτηριαδης Ευριπιδηςel
CreatorKozanitis Christosen
CreatorDollas Apostolosen
CreatorΔολλας Αποστολοςel
PublisherInstitute of Electrical and Electronics Engineersen
Content SummaryThe BLAST algorithm is the prevalent tool that is used by molecular biologists for DNA sequence matching and database search. In this work we demonstrate that with an appropriate reconfigurable architecture, BLAST performance can be improved with a single-chip solution 5 times over a specialized and optimized computer cluster, or 37 times over a single computer. These initial results account for I/O and are very encouraging for the development of a large scale, reconfigurable BLAST engine.en
Type of ItemΔημοσίευση σε Συνέδριοel
Type of ItemConference Publicationen
Licensehttp://creativecommons.org/licenses/by/4.0/en
Date of Item2015-11-17-
Date of Publication2006-
SubjectInformaticsen
Subjectcomputer scienceen
Subjectinformaticsen
Bibliographic CitationE. Sotiriades, C. Kozanitis and A. Dollas, "Some initial results on hardware BLAST acceleration with a reconfigurable architecture," in 20th International Parallel and Distributed Processing Symposium, 2006. doi: 10.1109/IPDPS.2006.1639532en

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