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Design space exploration for the BLAST algorithm implementation

Sotiriadis Evripidis, Dollas Apostolos

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URIhttp://purl.tuc.gr/dl/dias/0EE4DCC6-F128-4398-9942-4CCA20FA13F9-
Identifierhttp://ieeexplore.ieee.org/document/4297283/-
Identifierhttps://doi.org/10.1109/FCCM.2007.36-
Languageen-
Extent4 pagesen
TitleDesign space exploration for the BLAST algorithm implementationen
CreatorSotiriadis Evripidisen
CreatorΣωτηριαδης Ευριπιδηςel
CreatorDollas Apostolosen
CreatorΔολλας Αποστολοςel
PublisherInstitute of Electrical and Electronics Engineersen
Content SummaryThe most prevalent algorithm for DNA sequence matching is the BLAST algorithm. During recent years we have developed several FPGA-based architectures to speed up BLAST execution. In this work we present a new VLSI architecture as a followup to our reconfigurable logic-based architectures, and we compare the performance of several software and hardware implementations of BLAST.en
Type of ItemΔημοσίευση σε Συνέδριοel
Type of ItemConference Publicationen
Licensehttp://creativecommons.org/licenses/by/4.0/en
Date of Item2015-11-17-
Date of Publication2007-
SubjectComputers--Programmingen
SubjectElectronic computer programmingen
SubjectElectronic data processing--Programmingen
SubjectElectronic digital computers--Programmingen
SubjectProgramming (Electronic computers)en
Subjectcomputer programmingen
Subjectcomputers programmingen
Subjectelectronic computer programmingen
Subjectelectronic data processing programmingen
Subjectelectronic digital computers programmingen
Subjectprogramming electronic computersen
Bibliographic CitationE. Sotiriades and A. Dollas, "Design space exploration for the BLAST algorithm implementation," in 15th IEEE International Symposium on Field-Programmable Custom Computing Machines, 2007, pp. 323-326. doi: 10.1109/FCCM.2007.36en

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